publications

2024

  1. sc_mil.jpg
    SC-MIL: Supervised Contrastive Multiple Instance Learning for Imbalanced Classification in Pathology
    Dinkar Juyal, Siddhant Shingi, Syed Ashar Javed, Harshith Padigela, Chintan Shah, Anand Sampat, Archit Khosla, John Abel, and Amaro Taylor-Weiner
    In Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision (WACV) , Jan 2024
  2. Foundation AI models predict molecular measurements of tumor purity
    Ylaine Gerardin, Daniel Shenker, Jennifer Hipp, Natalia Harguindeguy, Dinkar Juyal, Chintan Shah, Syed Ashar Javed, Marc Thibault, Michael Nercessian, Darpan Sanghavi, and  others
    Cancer Research, Jan 2024
  3. P008 Machine learning derived histological features of epithelial injury and repair in Ulcerative Colitis biopsies correlate with disease severity
    M Griffin, Y Zhang, C Shah, J Shamshoian, V Mountain, K Sucipto, C Jayson, and F Najdawi
    Journal of Crohn’s and Colitis, Jan 2024
  4. pluto_fig.png
    PLUTO: Pathology-Universal Transformer
    Dinkar Juyal*, Harshith Padigela*Chintan Shah*, Daniel Shenker, Natalia Harguindeguy, Yi Liu, Blake Martin, Yibo Zhang, Michael Nercessian, Miles Markey, Isaac Finberg, Kelsey Luu, Daniel Borders, Syed Ashar Javed, Emma Krause, Raymond Biju, Aashish Sood, Allen Ma, Jackson Nyman, John Shamshoian, Guillaume Chhor, Darpan Sanghavi, Marc Thibault, Limin Yu, Fedaa Najdawi, Jennifer A. Hipp, Darren Fahy, Benjamin Glass, Eric Walk, John Abel, Harsha Pokkalla, Andrew H. Beck, and Sean Grullon
    May 2024

2023

  1. Synthetic DOmain-Targeted Augmentation (S-DOTA) Improves Model Generalization in Digital Pathology
    Sai Chowdary Gullapally, Yibo Zhang, Nitin Kumar Mittal, Deeksha Kartik, Sandhya Srinivasan, Kevin Rose, Daniel Shenker, Dinkar Juyal, Harshith Padigela, Raymond Biju, Victor Minden, Chirag Maheshwari, Marc Thibault, Zvi Goldstein, Luke Novak, Nidhi Chandra, Justin Lee, Aaditya Prakash, Chintan Shah, John Abel, Darren Fahy, Amaro Taylor-Weiner, and Anand Sampat
    May 2023
  2. Fully automated histological classification of cell types and tissue regions of celiac disease is feasible and correlates with the Marsh score
    Michael Griffin, Aaron Gruver, Chintan Shah, Qasim Wani, Darren Fahy, Archit Khosla, Christian Kirkup, Daniel Borders, Jackie A Brosnancashman, Angie D Fulford, and  others
    medRxiv, May 2023
  3. ContriMix: Unsupervised disentanglement of content and attribute for domain generalization in microscopy image analysis
    Tan H Nguyen, Dinkar Juyal, Jin Li, Aaditya Prakash, Shima Nofallah, Chintan Shah, Sai Chowdary Gullapally, Michael Griffin, Anand Sampat, John Abel, and  others
    arXiv preprint arXiv:2306.04527, May 2023

2022

  1. 552 Characteristics of the tumor microenvironment in IDH1-mutated cholangiocarcinoma patients from ClarIDHy trial
    H Duygu Saatcioglu, Juan Valle, Teresa Macarulla, Milind Javle, Do-Youn Oh, Lipika Goyal, Jake Conway, Janani Iyer, Fedaa Najdawi, Chintan Shah, Camelia Gliser, Susan Pandya, Scott Daigle, Ghassan Abou-Alfa, and Robin Kelley
    Journal for ImmunoTherapy of Cancer, May 2022
  2. Self-training of Machine Learning Models for Liver Histopathology: Generalization under Clinical Shifts
    Jin Li, Deepta Rajan, Chintan Shah, Dinkar Juyal, Shreya Chakraborty, Chandan Akiti, Filip Kos, Janani Iyer, Anand Sampat, and Ali Behrooz
    May 2022

2020

  1. p0.jpg
    Finding Patient Zero: Learning Contagion Source with Graph Neural Networks
    Chintan Shah, Nima Dehmamy, Nicola Perra, Matteo Chinazzi, Albert-László Barabási, Alessandro Vespignani, and Rose Yu
    May 2020